#NEXUS [written Mon Jan 11 13:59:56 CET 2021 by Mesquite version 3.61 (build 927) at Laurin.local/192.168.1.33 (Michel Laurin)] BEGIN TAXA; TITLE Taxa; DIMENSIONS NTAX=147; TAXLABELS akalph anthrpos pithkos kynokephalos kbos elephas hippos oreus indikosonos bonasos bous probaton aix boubalis oryx prox elaphos hys hippospot kamlosbaktr kamlosar delphis phk len pardalis lynx kyn alpx ths arktos iktis gal dasypous mysrodent nukteris echinos hystriches strouthos chelidn korax dryokolapts aigokephalos iktinos asterias kenchris glaux peristera phaps ortyx perdix alektrn sauros chamailen ophis echidna cheln chelnthal krokodeilos frog galeos zygaina leiobatos nark enchelys kestreys tainia muraina fishing_frog kapros gongros skaros elops synagris kichl perk silouros kyprinos xiphias belon kallinymos amia kbios skopaina trigl sparos hpatos glaukos chrysophrys teuthis teuthus spia polypodon heledn nautilos polypous_coch crawfish astakos kyfai_karides krangn karidn_mikr maia pagouros heraklkark potamios karkinion kochlias kochliai porphyra keryx nereites lepas lepasagria haimorrhois kteis mysbivalve sln galax limnostreon pinna concharhabd conchaarhabd tethyon urchin spatanges bryssos echinometra smallurchin skolopthal ioulos skolopendra melitta anthrn sphx karaboi kantharis beetle mlolonth myps oistros myia empis psych pedetika tettigonia achetai skorpios biblioisskor ; END; BEGIN CHARACTERS; TITLE Character_Matrix; DIMENSIONS NCHAR=161; FORMAT DATATYPE = STANDARD RESPECTCASE GAP = - MISSING = ? SYMBOLS = " 0 1 2 3 4 5 6"; CHARSTATELABELS 1 'oesophagus (mouth)' / no yes, 2 intestine / no yes, 3 blood / without with, 4 oviparous / no yes, 5 'vermiparous (grub-bearing)' / no yes, 6 viviparity / not_viviparous directly_viviparous directly_viviparous, 7 neck / absent present, 8 forelegs_instead_of_arms / no yes, 9 'fore-limbs serve purposes of hands' / no yes, 10 toes_indistictly_defined / no yes, 11 'many-toed' / no yes, 12 'chest broad, breasts in front' / no yes, 13 'chest narrow, breats at bottom' / no yes, 14 breasts_near_chest / no yes, 15 four_legs / no yes, 16 two_legs / no yes, 17 flexion_of_hind_limbs_like_in_man / no yes, 18 front_legs_bend_forewards / no yes, 19 hind_legs_bend_backwards / no yes, 20 'legs bend forwards, with a slight swerve on one side' / no yes, 21 arms_bend_backwards / no yes, 22 wings_bend_forwards / no yes, 23 'front feet just behind shoulder-blade' / no yes, 24 gait / 'crosswise, limb on the right-hand side is first to move' 'progressing by an amble, never overpassing the right with the left' not_walking_on_4_legs, 25 hairiness / 'hair-coated, back hairier than belly' 'hair-coated, back and belly equally hairy;' 'only few short hairs, more on the belly' goes_on_gradually_hardening_into_bristle_until_it_no_longer_resembles_hair_but_spine scarcely_hairy no_hairs, 26 eyelids / no yes, 27 Eyelashes / none upper upper_and_lower, 28 mane / none around_the_neck stripe_from_head_to_withers, 29 'cloven-footed' / no yes, 30 'back foot with cleft extending as far up as the second joint of the toes; front foot with small hooves on the tip of the first' / no yes, 31 'huckle-bone (Astragalus, Talus)' / no yes, 32 Teeth / saw_toothed flat_opposing_crown no_teeth 'two teeth (actually a horny beak)', 33 Set_of_teeth / none equally_furnished_in_both_jaws not_equally_furnished_in_both_jaws, 34 tusks / no yes, 35 legs / 'bony, sinewy, and fleshless' 'buttock, thigh, and calf fleshy' no_legs, 36 nails_instead_of_hooves / no_fingers fingers_without_any_horny_structure_on_its_tip fingers_with_nails_or_claws fingers_with_hooves, 37 uncloven_of_foot / no yes, 38 horns / single_horned two_hollow_horns 'two antlers, hard and solid ^nthroughout, annually shed' no_horns, 39 Breasts / none two four many, 40 Number_of_teats / many four two none, 41 Penis / external internal none, 42 Testicles / absent 'internal, close to loin and kidney' 'internal, close to belly' external, 43 Direction_of_urine_discharge / forwards backwards neither, 44 composition_of_penis / no_penis composed_of_flesh_and_gristle 'composed of fi^nbrous tissue' bony, 45 tail_of_a_pig / no yes, 46 rump / no yes, 47 'passage for hearing (auditory canal)' / no yes, 48 ears / no yes, 49 tongue / no_tongue 'hard and spiny, firmly attached' fleshy forked, 50 ribs_stretch_downwards_and_meet_together / no yes, 51 'haunch-bone long, like a thigh, attached to the body as far as the belly' / no yes, 52 three_toes_in_front_and_one_behind_in_place_of_a_heel / no yes, 53 beak / no yes, 54 lower_eyelid / no yes, 55 crooked_talons / no yes, 56 spurs / no yes, 57 'neither scutes nor hair, but feath' / no yes, 58 epiglottis / yes no, 59 passage_for_the_genitals_visible_externally / yes no, 60 Number_of_fins / four two none, 61 'coverings or opercula ("epikalymmata") for the gills' / no yes, 62 Gill_position / absent sideways 'below, on belly', 63 Fleshy_operculum_covering_gills / absent present, 64 Number_and_shape_of_gills / 'one (simple' 'two (one duplicate, one simple)' 'four (simple)' 'four (three duplicate, one simple)' 'five (duplicate)' 'eight (duplicate)', 65 scales / no yes, 66 tessellated_scutes / no yes, 67 teeth_set_in_many_rows / no yes, 68 oesophagus / no yes, 69 windpipe / no yes, 70 lung / no yes, 71 heart / no yes, 72 'diaphragm / midriff' / no yes, 73 Position_of_ponted_end_of_heart / forwards towards_head_and_mouth absent, 74 bone_inside_the_heart / no yes, 75 liver / no yes, 76 spleen / no yes, 77 gall_bladder / close_to_the_liver close_to_the_gut near_at_once_to_the_liver_and_the_gut 'close to the gut, attached to the liver by certain extremely fine ducts' no_gall_bladder, 78 kidney / no yes, 79 bladder / no yes, 80 apex_of_heart_attached_to_a_tube_just_where_the_right_and_left_gills_meet_together / no yes, 81 'stomach with four chambers (animals chew' / no yes, 82 'no testicles, but two ducts converging into one' / no yes, 83 windpipe_commences_so_close_to_the_mouth_that_the_tongue_appears_to_derneath_it / no yes, 84 single_lung / no yes, 85 ribs_as_numerous_as_the_days_of_the_month / no yes, 86 Number_of_caeca / none few numerous, 87 crop / no yes, 88 portion_of_stomach_resembles_a_crop / no yes, 89 womb / no yes, 90 womb_close_to_the_midriff / no yes, 91 womb_membranous_and_elongated / no yes, 92 'crumbling egg (roe)' / no yes, 93 'lower and tubular portion of womb fleshy and firm, the part close to the midriff^nme mbranous and exceedingly thin and fine' / no yes, 94 womb_bifurcate / no yes, 95 position_of_embryo_in_the_womb / embryo_connectd_to_the_cotyledones embryo_directly_connected_to_the_womb no_vivipary, 96 breasts_supplied_with_milk / no yes, 97 blood_coagulates_when_issuing_from_the_body / yes no, 98 'non-copulative (abiogenesis / spontaneous generation, automata)' / no yes, 99 egg_granular / no yes, 100 'flesh-like substance outside, any hard structure inside' / no yes, 101 'minute organ of a fleshy nature, used as a tongue' / no yes, 102 head_between_the_feet / no yes, 103 'Number of so-called feet' / none eight eight_and_a_pair_of_tentacles, 104 Number_of_rows_on_suckers_on_each_foot / no_such_feet two_rows one_row, 105 'last of feelers ("feet" Hectocotylus) employed in the act of copulation' / no yes, 106 'hollow tube, by means of which sea-water and black liquid is discharged' / no yes, 107 Proportions_of_body_and_feet / no_feet_at_head 'body small, feet long' 'body large, feet shorter', 108 two_teeth_in_the_mouth / no yes, 109 head_comes_after_the_feet / no yes, 110 'sac; the flesh of which it is made is divisible, annular flakes (think of "calamari fritti" in an Italian restaurant)' / no yes, 111 'oesophagus runs through organ called "mytis" situated under the mouth' / no yes, 112 vessel_containing_a_thick_black_juice_that_is_discharged_when_frightened / no yes, 113 Hard_parts_towards_back_of_body / none sepium gladius, 114 molluscs_found_in_shells_resembling_testaceans / no yes, 115 'hard structure outside, soft substance inside, hard substance has to be crushed rather than shattered' / no yes, 116 'eyes hard and beady, and can move either to the inner or to the outer side (eyes on stalks)' / no yes, 117 five_feet_on_either_side / no yes, 118 'claws (chelae)' / no yes, 119 'Tail (pleon)' / no yes, 120 'body rotund (pleon = "ventral flap")' / no yes, 121 'Number of fins (uropodes) on tail (pleon)' / none four five, 122 'two teeth, above these teeth are the antennae (probably sphaerocerites of deca^npod crustaceans)' / no yes, 123 'gut terminates where the flap (pleon) is situated, and in the centre of the flap' / no yes, 124 'mytis," or "poppyjuice" (analogous to liver)' / no yes, 125 'eyes in the centre (of anterior edge of cephalothorax) and close together' / no yes, 126 'males with two separate and distinct white substances in connexion with ^nthe chest, resembling in colour and conformation the tentacles of the cut^ntie-fish, and convoluted like the "poppy" or quasi-liver of the trumpe-shellt^nshell' / no yes, 127 'hard substance outside, flesh-like substance within, hard substance can be shat^ntered but not crushed' / no yes, 128 flesh_at_all / no yes, 129 'flesh inside and wholly hidden (within shell), except the head' / no yes, 130 bivalved / not_bivalved 'shells grown together on one side and separate ^non the other' shells_closed_on_both_sides_alike, 131 Shell_surfaces_of_bivalves / not_bivalved rough_and_ribbed 'rough, not ribbed' smooth, 132 testacean_that_can_move_and_creep / no yes, 133 'fleshy substance adheres to the shell so tenaciously that it can only be removed^nby an effort' / no yes, 134 fleshy_substance_more_loosely_attached_to_the_shell / no yes, 135 'two horns (feelers)' / no yes, 136 'tongue-shaped proboscis just like that of the fly; used to bore right through the^nshells of other shell-fish' / no yes, 137 'stomach resembles a bird''s crop' / no yes, 138 'Position of poppy or quasi-liver' / no_such_organ in_whorl_of_shell deep_in_bottom_of_shell at_hinge_of_valves, 139 'mouth down below, and a place for the issue of the residuum up above' / no yes, 140 five_hollow_teeth / no yes, 141 'underneath the stomach five so-called eggs' / no yes, 142 lantern_of_Aristode / no yes, 143 'shell is a substance intermediate between hide and (hard) shell, so that it cuts^nlike a piece of hard leather' / no yes, 144 attached_to_rocks / no yes, 145 'two passages placed at a distance from one another, very minute and hard to see,^nwhereby it admits and discharges the sea-water' / no yes, 146 entire_body_fleshy / no yes, 147 mouth_in_the_centre_of_body / no yes, 148 'nicks either on the belly or on the back, or on both belly and back' / no yes, 149 body_by_its_hardness_is_its_own_protection_and_requires_no_extraneous_support / no yes, 150 'body consists of head, trunk containing the stomach, and a third part in betwixt these two, corresponding to what in other creatures embraces chest and back' / no yes, 151 'intermediate part (third part, see char. 150) is single; has practically the same ^nnumber of segments as of nicks' / no yes, 152 'Wings (insects)' / none two four 'sheath or shard for the wings (elythra)', 153 'kind of a tongue / frontward sting (proboscis, piercing-sucking mouthparts)' / no yes, 154 Prickers_or_stings_in_the_rear / none inside outside, 155 antennae_near_the_eyes / no yes, 156 'hinder legs the longer; and these long hind-legs whereby they jump bend back wards like the hind-legs of quadrupeds' / no yes, 157 'unprovided with a mouth, but with the tongue-like formation found in insects furnished with frontward stings' / no yes, 158 'Presence of gills (part of ch. 64)' / absent present, 159 'sinews (new)' / absent 'present, but very thin' 'present, thick', 160 medial_corner_eyelid / absent present, 161 upper_eyelid / absent present ; MATRIX akalph 110?02000000000000000002500000020020-30020200000000000000112-00-00000000200040000000000000-00020-1000000000000000000000000000000000000000000000101100000000000000 anthrpos 111001100011000110001002212000011012-31203010011200001000002-00-0001111100110110000000001000001100000000000000000000000000000000000000000000000000000000000000201 pithkos 111001100011000110001002112000011002-312030?0011200001000?02-00-0001111100110110000000001000001100000000000000000000000000000000000000000000000000000000000000201 kynokephalos 111001100011000110001002112000011002-312030?0011200001000?02-00-0001111100110110000000001000001100000000000000000000000000000000000000000000000000000000000000201 kbos 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110112000000000000000002500000020020-30320200000000000000112-00-00000000200040000000000000-00020-0100000000000000011101021010000000000000000000000000000001000000 astakos 110???000000000000000002500000020020-30320200000000000000112-00-00000000200040000000000000-00020-??00000000000000011111021010000000000000000000000000000001000000 kyfai_karides 1101??000000000000000002500000020020-30320200000000000000112-00-00000000200040000000000000-00020-??00000000000000011101011010100000000000000000000000000000000000 krangn 110???000000000000000002500000020020-30320200000000000000112-00-00000000200040000000000000-00020-??000000000000000111010?1010100000000000000000000000000000000000 karidn_mikr 110???000000000000000002500000020020-30320200000000000000112-00-00000000200040000000000000-00020-??00000000000000011101011010100000000000000000000000000000000000 maia 110???000000000000000002500000020020-30320200000000000000112-00-00000000200040000000000000-00020-??00000000000000011110101111000000000000000000000000000000000000 pagouros 110???000000000000000002500000020020-30320200000000000000112-00-00000000200040000000000000-00020-??00000000000000011110101110000000000000000000000000000000000000 heraklkark 110???000000000000000002500000020020-30320200000000000000112-00-00000000200040000000000000-00020-??00000000000000011110101111000000000000000000000000000000000000 potamios 110???000000000000000002500000020020-30320200000000000000112-00-00000000200040000000000000-00020-??00000000000000011110101110000000000000000000000000000000000000 karkinion 1100?2000000000000000002500000020020-30320200000000000000112-00-00000000200040000000000000-00020-1000000000000000011101001010000000000000000000000000000000000000 kochlias 110?02000000000000000002500000020020-30320200000000000000112-00-00010000200040000000000000-00020-1000000000000000000000000000010100101100?00000000000000000000000 kochliai 110?02000000000000000002500000020020-30320200000000000000112-00-00010000200040000000000000-00020-1000000000000000000000000000010100101100?00000000000000000000000 porphyra 110102000000000000000002500000020020-30320200000000000000112-00-00000000200040000000000000-00020-1000000000000000000000000000010100101111100000000000000000000000 keryx 110102000000000000000002500000020020-30320200000000000000112-00-00000000200040000000000000-00020-1000000000000000000000000000010100101111100000000000000000000000 nereites 110102000000000000000002500000020020-30320200000000000000112-00-00000000200040000000000000-00020-1000000000000000000000000000010100101101100000000000000000000000 lepas 110102000000000000000002500000020020-30320200000000000000112-00-00000000200040000000000000-00020-1000000000000000000000000000010000110000200000000000000000000000 lepasagria 110102000000000000000002500000020020-30320200000000000000112-00-00000000200040000000000000-00020-1000000000000000000000000000010000110000200000000000000000000000 haimorrhois 110?02000000000000000002500000020020-30320200000000000000112-00-00000000200040000000000000-00020-1000000000000000000000000000010100101101100000000000000000000000 kteis 110102000000000000000002500000020020-30320200000000000000112-00-00000000200040000000000000-00020-1000000000000000000000000000010011010000300000000000000000000000 mysbivalve 110102000000000000000002500000020020-30320200000000000000112-00-00000000200040000000000000-00020-1000000000000000000000000000010013010000300000000000000000000000 sln 110102000000000000000002500000020020-30320200000000000000112-00-00000000200040000000000000-00020-1000000000000000000000000000010023010000300000000000000000000000 galax 110102000000000000000002500000020020-30320200000000000000112-00-00000000200040000000000000-00020-1000000000000000000000000000010013010000300000000000000000000000 limnostreon 110102000000000000000002500000020020-30320200000000000000112-00-00000000200040000000000000-00020-1000000000000000000000000000010012010000300000000000000000000000 pinna 110102000000000000000002500000020020-30320200000000000000112-00-00000000200040000000000000-00020-1000000000000000000000000000010022010000300000000000000000000000 concharhabd 110102000000000000000002500000020020-30320200000000000000112-00-00000000200040000000000000-00020-1000000000000000000000000000010011010000300000000000000000000000 conchaarhabd 110102000000000000000002500000020020-30320200000000000000112-00-00000000200040000000000000-00020-1000000000000000000000000000010011010000300000000000000000000000 tethyon 110?02000000000000000002500000020020-30320200000000000000112-00-00000000200040000000000000-00020-1000000000000000000000000000000000000000000001110000000000000000 urchin 110102000000000000000002500000020020-30320200000000000000112-00-00000000200040000000000000-00020-1000000000000000000000000000011000000000011110000000000000000000 spatanges 110?02000000000000000002500000020020-30320200000000000000112-00-00000000200040000000000000-00020-1000000000000000000000000000011000000000011110000000000000000000 bryssos 110?02000000000000000002500000020020-30320200000000000000112-00-00000000200040000000000000-00020-1000000000000000000000000000011000000000011110000000000000000000 echinometra 110?02000000000000000002500000020020-30320200000000000000112-00-00000000200040000000000000-00020-1000000000000000000000000000011000000000011110000000000000000000 smallurchin 110?02000000000000000002500000020020-30320200000000000000112-00-00000000200040000000000000-00020-1000000000000000000000000000011000000000011110000000000000000000 skolopthal 110??2000000000000000002500000020020-30320200000000000000112-00-00000000200040000000000000-00020-?000000000000000000000000000000000000000000000000011010000000000 ioulos 110??2000000000000000002500000020020-30320200000000000000112-00-00000000200040000000000000-00020-?000000000000000000000000000000000000000000000000011010000000000 skolopendra 110??2000000000000000002500000020020-30320200000000000000112-00-00000000200040000000000000-00020-?000000000000000000000000000000000000000000000000011010000000000 melitta 110?12000000000000000002500000020020-30320200000000000000112-00-00000000200040000000000000-00020-0000000000000000000000000000000000000000000000000011102010010000 anthrn 110?12000000000000000002500000020020-30320200000000000000112-00-00000000200040000000000000-00020-?000000000000000000000000000000000000000000000000011102010000000 sphx 110?12000000000000000002500000020020-30320200000000000000112-00-00000000200040000000000000-00020-?000000000000000000000000000000000000000000000000011102010000000 karaboi 110?12000000000000000002500000020020-30320200000000000000112-00-00000000200040000000000000-00020-?000000000000000000000000000000000000000000000000011103001000000 kantharis 110??2000000000000000002500000020020-30320200000000000000112-00-00000000200040000000000000-00020-?000000000000000000000000000000000000000000000000011103000000000 beetle 110??2000000000000000002500000020020-30320200000000000000112-00-00000000200040000000000000-00020-?000000000000000000000000000000000000000000000000011103000000000 mlolonth 110?12000000000000000002500000020020-30320200000000000000112-00-00000000200040000000000000-00020-1000000000000000000000000000000000000000000000000011103000000000 myps 110?12000000000000000002500000020020-30320200000000000000112-00-00000000200040000000000000-00020-1000000000000000000000000000000000000000000000000011101100000000 oistros 110??2000000000000000002500000020020-30320200000000000000112-00-00000000200040000000000000-00020-1000000000000000000000000000000000000000000000000011101100000000 myia 110?12000000000000000002500000020020-30320200000000000000112-00-00000000200040000000000000-00020-1000000000000000000000000000000000000000000000000011101100000000 empis 110002000000000000000002500000020020-30320200000000000000112-00-00000000200040000000000000-00020-1000000000000000000000000000000000000000000000000011101100000000 psych 110?12000000000000000002500000020020-30320200000000000000112-00-00000000200040000000000000-00020-?000000000000000000000000000000000000000000000000011102001000000 pedetika 110012000000000000000002500000020020-30320200000000000000112-00-00000000200040000000000000-00020-000000000000000000000000000000000000000000000000001110?000100000 tettigonia 110?12000000000000000002500000020020-30320200000000000000112-00-00000000200040000000000000-00020-000000000000000000000000000000000000000000000000001110?000010000 achetai 110?12000000000000000002500000020020-30320200000000000000112-00-00000000200040000000000000-00020-000000000000000000000000000000000000000000000000001110?000010000 skorpios 110011000000000000000002500000020020-30320200000000000000112-00-00000000200040000000000000-00020-?000000000000000000000000000000000000000000000000011000020000000 biblioisskor 110??2000000000000000002500000020020-30320200000000000000112-00-00000000200040000000000000-00020-1000000000000000000000000000000000000000000000000011000000000000 ; END; BEGIN ASSUMPTIONS; USERTYPE Stepmatrix_breasts (Stepmatrix) = 4 0 1 2 3 0 1 1 1 1 0 1 2 1 1 0 1 1 2 1 0 ; USERTYPE 'Stepmatrix number of gills (inconsitent; do not use)' (Stepmatrix) = 7 0 1 2 3 4 5 6 0 1 1 1 1 1 1 1 0 1 2 3 4 5 1 1 0 1 2 3 4 1 2 1 0 1 2 3 1 3 2 1 0 1 2 1 4 3 2 1 0 1 1 5 4 3 2 1 0 ; TYPESET * UNTITLED = unord: 1- 26 28- 32 34- 38 40- 41 43- 63 65- 130 132- 158 160- 161, ord: 27 33 64 159, Stepmatrix_breasts: 39-42\3 131; END; BEGIN MESQUITECHARMODELS; ProbModelSet * UNTITLED = 'Mk1 (est.)': 1- 161; END; BEGIN TREES[!'Parameters: Trees obtained from file Aristotle consensus of 200 000 of 306 steps batch 2.tre^n3 trees.']; Title Consensus_Trees_of_200_000_tr_306_steps_ord; ID CR2P1769b27cf8f8; LINK Taxa = Taxa; TRANSLATE [0] 1 akalph, [1] 2 anthrpos, [2] 3 pithkos, [3] 4 kynokephalos, [4] 5 kbos, [5] 6 elephas, [6] 7 hippos, [7] 8 oreus, [8] 9 indikosonos, [9] 10 bonasos, [10] 11 bous, [11] 12 probaton, [12] 13 aix, [13] 14 boubalis, [14] 15 oryx, [15] 16 prox, [16] 17 elaphos, [17] 18 hys, [18] 19 hippospot, [19] 20 kamlosbaktr, [20] 21 kamlosar, [21] 22 delphis, [22] 23 phk, [23] 24 len, [24] 25 pardalis, [25] 26 lynx, [26] 27 kyn, [27] 28 alpx, [28] 29 ths, [29] 30 arktos, [30] 31 iktis, [31] 32 gal, [32] 33 dasypous, [33] 34 mysrodent, [34] 35 nukteris, [35] 36 echinos, [36] 37 hystriches, [37] 38 strouthos, [38] 39 chelidn, [39] 40 korax, [40] 41 dryokolapts, [41] 42 aigokephalos, [42] 43 iktinos, [43] 44 asterias, [44] 45 kenchris, [45] 46 glaux, [46] 47 peristera, [47] 48 phaps, [48] 49 ortyx, [49] 50 perdix, [50] 51 alektrn, [51] 52 sauros, [52] 53 chamailen, [53] 54 ophis, [54] 55 echidna, [55] 56 cheln, [56] 57 chelnthal, [57] 58 krokodeilos, [58] 59 frog, [59] 60 galeos, [60] 61 zygaina, [61] 62 leiobatos, [62] 63 nark, [63] 64 enchelys, [64] 65 kestreys, [65] 66 tainia, [66] 67 muraina, [67] 68 fishing_frog, [68] 69 kapros, [69] 70 gongros, [70] 71 skaros, [71] 72 elops, [72] 73 synagris, [73] 74 kichl, [74] 75 perk, [75] 76 silouros, [76] 77 kyprinos, [77] 78 xiphias, [78] 79 belon, [79] 80 kallinymos, [80] 81 amia, [81] 82 kbios, [82] 83 skopaina, [83] 84 trigl, [84] 85 sparos, [85] 86 hpatos, [86] 87 glaukos, [87] 88 chrysophrys, [88] 89 teuthis, [89] 90 teuthus, [90] 91 spia, [91] 92 polypodon, [92] 93 heledn, [93] 94 nautilos, [94] 95 polypous_coch, [95] 96 crawfish, [96] 97 astakos, [97] 98 kyfai_karides, [98] 99 krangn, [99] 100 karidn_mikr, [100] 101 maia, [101] 102 pagouros, [102] 103 heraklkark, [103] 104 potamios, [104] 105 karkinion, [105] 106 kochlias, [106] 107 kochliai, [107] 108 porphyra, [108] 109 keryx, [109] 110 nereites, [110] 111 lepas, [111] 112 lepasagria, [112] 113 haimorrhois, [113] 114 kteis, [114] 115 mysbivalve, [115] 116 sln, [116] 117 galax, [117] 118 limnostreon, [118] 119 pinna, [119] 120 concharhabd, [120] 121 conchaarhabd, [121] 122 tethyon, [122] 123 urchin, [123] 124 spatanges, [124] 125 bryssos, [125] 126 echinometra, [126] 127 smallurchin, [127] 128 skolopthal, [128] 129 ioulos, [129] 130 skolopendra, [130] 131 melitta, [131] 132 anthrn, [132] 133 sphx, [133] 134 karaboi, [134] 135 kantharis, [135] 136 beetle, [136] 137 mlolonth, [137] 138 myps, [138] 139 oistros, [139] 140 myia, [140] 141 empis, [141] 142 psych, [142] 143 pedetika, [143] 144 tettigonia, [144] 145 achetai, [145] 146 skorpios, [146] 147 biblioisskor; TREE Strict_consensus_Trees_of_200_000_tr_306_st_ord_ = (1,(122,((111,112,(123,124,125,126,127),((106,107),(110,113,(108,109))),(114,115,116,117,118,119,120,121)),(((102,104,(101,103)),(105,(96,97),(98,99,100))),(146,147,(128,129,130),(131,132,133,134,135,136,137,142,143,144,145,(138,139,140,141)))),(((92,93),(94,95),(89,90,91)),((64,65,66,67,68,69,70,71,72,73,74,75,76,77,78,79,80,81,82,83,84,85,86,87,88,((60,61),(62,63)'Platea selachon (Batoidei)')Selache)Ichthyes,((54,55)Opheis,(((56,57,58,59,(52,53))Ootoka_Tetrapoda,((49,(50,51))Galliformes,(38,39,40,41,42,(47,48),(43,44,45,46)))Ornithes)'NN (most sauropsids)',(22,((2,3,4,5)Pithekoi,(35,(7,8,9,(23,24,25,26,27,28,29,30,31,32,33,34,(37,(6,36))),((18,19),((20,21)'NN (Camelus)',(10,11,12,13,15,(14,16,17))'Keratophora (Ruminantia)')))))Zootoka_Tetrapoda))))'Enhaima (Gnathostomata)')))); TREE MajRule_consensus_Trees_of_200_000_tr_306_st_ord_ = (1:50,(122:100,((((102:100,104:100,(101:100,103:100):100)'Karkinoi (Brachyura)':100,(105:100,((96:100,97:100):100,(99:100,(98:100,100:100):99.29)'Karides (Natantia and Stomatopoda))':100):99.602):100)Malakostraka:100,((128:100,129:100,130:100)'Polypoda 1 (Myriapoda)':100,(147:100,(146:100,((138:100,140:100,(139:100,141:100):98.101)Diptera:100,(137:100,(135:100,(134:100,(136:100,(143:100,((144:100,145:100):99.12,(142:100,(131:100,(132:100,133:100):3.216):99.077):93.18):91.23):39.025):85.459):85.978):89.523):91.018)'NN (Hexapoda)':100):96.55):96.945)'Entoma (land arthropods)':100)'NN (Arthropoda)':100,(((123:100,124:100,125:100,126:100,127:100)Echinoi:100,(((111:100,112:100)Monothyra:97.731,((106:100,107:100):100,(110:100,113:100,(108:100,109:100):100)'Kochloi (sea snails)':100)'Strombode (Caenogastropoda)':100):95.099,(116:100,((115:100,117:100):14.826,(119:100,(118:100,(114:100,120:100,121:100):98.856):14.819):92.913)Anaptykta:88.135)'Dithyra (Bivalvia)':100):96.83)Ostrakoderma:100,(((94:100,95:100):100,((92:100,93:100)'Polypoda 2 (Octopoda))':100,(89:100,(90:100,91:100):98.687):100):98.785)'Malakia (Cephalopoda)':100,((((60:100,61:100):100,(62:100,63:100)'Platea selachon (Batoidei)':100)Selache:100,(64:100,(70:100,(65:100,(66:100,((80:100,(79:100,(77:100,(74:100,(76:100,(75:100,82:100,83:100,84:100,85:100):99.809):0.256):0.359):88.746):83.938):83.763,((86:100,87:100,88:100):99.975,(78:100,(67:100,72:100,73:100,(68:100,(71:100,(69:100,81:100):92.171):92.326):91.921):14.535):83.133):82.27):99.997):6.319):99.997):99.977)'Kalymmata (Teleostei)':99.998)Ichthyes:100,((54:100,55:100)Opheis:100,(((59:100,(56:100,57:100,58:100,(52:100,53:100):100)'NN (most ectothermic reptiles))':99.468)Ootoka_Tetrapoda:100,((49:100,(50:100,51:100):100)'Bareis (Galliformes)':100,((45:100,(46:100,(43:100,44:100):97.152):93.934)'Gampsonyches (Accipitriformes)':100,(42:100,(41:100,(38:100,39:100,40:100,(47:100,48:100):100):12.908):92.559):89.914):100)Ornithes:100):100,(22:100,((5:100,(4:100,(2:100,3:100):96.171):95.837)'Pithekoi (Catharrini)':100,(35:100,(((37:100,(6:100,36:100):100):100,((33:100,(23:100,(24:100,26:100):99.299):90.74):93.165,(34:100,(31:100,(32:100,(28:100,(25:100,30:100,(27:100,29:100):21.54):72.639):64.932):63.371):72):75.938):99.166):100,((9:100,(7:100,8:100):97.713)'Monyches (Equidae)':98.723,((18:100,19:100):100,((20:100,21:100)'NN (Camelus)':100,(15:100,((12:100,13:100):96.305,((10:100,11:100):90.454,(14:100,16:100,17:100):100):88.607):90.057)'Keratophora (Ruminantia)':100)Amphodonta:100)'Dichala (Artiodactyla)':100):99.021):100):100)Zootoka_Tetrapoda:100)'NN (Mammalia)':100):100)'NN (Tetrapoda)':100)'Enhaima (Gnathostomata)':100):100):98.973):100):50); TREE Adams_consensus_Trees_of_200_000_tr_306_st_ord_ = (1,(122,(((111,112),(123,124,125,126,127),((106,107),(110,113,(108,109))),(114,115,116,117,118,119,120,121)),(((102,104,(101,103)),(105,(96,97),(98,99,100))),(146,147,(128,129,130),(134,135,136,137,142,(138,139,140,141),(131,143,(132,133),(144,145))))),(((92,93),(94,95),(89,90,91)),((64,((60,61),(62,63)),(68,70,(65,66,78,(67,69,71,72,73,74,76,77,79,80,81,(86,87,88),(75,82,83,84,85))))),((54,55),(((56,57,58,59,(52,53)),((49,(50,51)),(38,39,40,41,42,(47,48),(43,44,45,46)))),(22,((2,3,4,5),(35,((7,8,9),((18,19),((20,21),(10,11,12,13,15,(14,16,17)))),(33,34,(37,(6,36)),(23,28,29,31,32,(24,26),(25,27,30)))))))))))))); END; BEGIN TREES[!'Parameters: Trees obtained from file Aristotle cons 200 000 tr 301 steps unordered.tre^n3 trees.']; Title Consensus_Trees_of_200_000_tr_301_steps_unord; ID CR2P176a44fbead11; LINK Taxa = Taxa; TRANSLATE [0] 1 akalph, [1] 2 anthrpos, [2] 3 pithkos, [3] 4 kynokephalos, [4] 5 kbos, [5] 6 elephas, [6] 7 hippos, [7] 8 oreus, [8] 9 indikosonos, [9] 10 bonasos, [10] 11 bous, [11] 12 probaton, [12] 13 aix, [13] 14 boubalis, [14] 15 oryx, [15] 16 prox, [16] 17 elaphos, [17] 18 hys, [18] 19 hippospot, [19] 20 kamlosbaktr, [20] 21 kamlosar, [21] 22 delphis, [22] 23 phk, [23] 24 len, [24] 25 pardalis, [25] 26 lynx, [26] 27 kyn, [27] 28 alpx, [28] 29 ths, [29] 30 arktos, [30] 31 iktis, [31] 32 gal, [32] 33 dasypous, [33] 34 mysrodent, [34] 35 nukteris, [35] 36 echinos, [36] 37 hystriches, [37] 38 strouthos, [38] 39 chelidn, [39] 40 korax, [40] 41 dryokolapts, [41] 42 aigokephalos, [42] 43 iktinos, [43] 44 asterias, [44] 45 kenchris, [45] 46 glaux, [46] 47 peristera, [47] 48 phaps, [48] 49 ortyx, [49] 50 perdix, [50] 51 alektrn, [51] 52 sauros, [52] 53 chamailen, [53] 54 ophis, [54] 55 echidna, [55] 56 cheln, [56] 57 chelnthal, [57] 58 krokodeilos, [58] 59 frog, [59] 60 galeos, [60] 61 zygaina, [61] 62 leiobatos, [62] 63 nark, [63] 64 enchelys, [64] 65 kestreys, [65] 66 tainia, [66] 67 muraina, [67] 68 fishing_frog, [68] 69 kapros, [69] 70 gongros, [70] 71 skaros, [71] 72 elops, [72] 73 synagris, [73] 74 kichl, [74] 75 perk, [75] 76 silouros, [76] 77 kyprinos, [77] 78 xiphias, [78] 79 belon, [79] 80 kallinymos, [80] 81 amia, [81] 82 kbios, [82] 83 skopaina, [83] 84 trigl, [84] 85 sparos, [85] 86 hpatos, [86] 87 glaukos, [87] 88 chrysophrys, [88] 89 teuthis, [89] 90 teuthus, [90] 91 spia, [91] 92 polypodon, [92] 93 heledn, [93] 94 nautilos, [94] 95 polypous_coch, [95] 96 crawfish, [96] 97 astakos, [97] 98 kyfai_karides, [98] 99 krangn, [99] 100 karidn_mikr, [100] 101 maia, [101] 102 pagouros, [102] 103 heraklkark, [103] 104 potamios, [104] 105 karkinion, [105] 106 kochlias, [106] 107 kochliai, [107] 108 porphyra, [108] 109 keryx, [109] 110 nereites, [110] 111 lepas, [111] 112 lepasagria, [112] 113 haimorrhois, [113] 114 kteis, [114] 115 mysbivalve, [115] 116 sln, [116] 117 galax, [117] 118 limnostreon, [118] 119 pinna, [119] 120 concharhabd, [120] 121 conchaarhabd, [121] 122 tethyon, [122] 123 urchin, [123] 124 spatanges, [124] 125 bryssos, [125] 126 echinometra, [126] 127 smallurchin, [127] 128 skolopthal, [128] 129 ioulos, [129] 130 skolopendra, [130] 131 melitta, [131] 132 anthrn, [132] 133 sphx, [133] 134 karaboi, [134] 135 kantharis, [135] 136 beetle, [136] 137 mlolonth, [137] 138 myps, [138] 139 oistros, [139] 140 myia, [140] 141 empis, [141] 142 psych, [142] 143 pedetika, [143] 144 tettigonia, [144] 145 achetai, [145] 146 skorpios, [146] 147 biblioisskor; TREE Strict = (1,(122,((111,112,(123,124,125,126,127),((106,107),(110,113,(108,109))),(114,115,116,117,118,119,120,121)),(((102,104,(101,103)),(105,(96,97),(98,99,100))),(146,147,(128,129,130),(131,132,133,134,135,136,137,142,143,144,145,(138,139,140,141)))),(((92,93),(94,95),(89,90,91)),((((60,61),(62,63)),(64,(70,(65,66,(67,68,69,71,72,73,74,75,76,77,78,79,80,81,82,83,84,85,86,87,88))))),((54,55),(((56,57,58,59,(52,53)),((49,(50,51)),(38,39,40,41,42,(47,48),(43,44,45,46)))),(22,((2,3,4,5),(6,23,24,25,26,27,28,29,30,31,32,33,34,35,36,37,(7,8,9,((18,19),((20,21),(10,11,12,13,15,(14,16,17))))))))))))))); TREE MajRule = (1:50,(122:100,((((102:100,104:100,(101:100,103:100):100):100,(105:100,((96:100,97:100):100,(99:100,(98:100,100:100):99.75):100):99.752):100):100,((128:100,129:100,130:100):100,(147:100,(146:100,((138:100,140:100,(139:100,141:100):99.471):100,(137:100,(135:100,(134:100,(136:100,(143:100,((144:100,145:100):99.752,(142:100,(131:100,(132:100,133:100):0.645):99.748):97.633):96.097):37.366):32.55):94.822):96.376):50.131):100):41.721):35.261):100):100,(((123:100,124:100,125:100,126:100,127:100):100,(((111:100,112:100):98.509,((106:100,107:100):100,(110:100,113:100,(108:100,109:100):100):100):100):95.582,(116:100,((115:100,117:100):0.427,((118:100,119:100):97.436,(114:100,120:100,121:100):98.873):38.772):89.323):100):61.51):100,(((94:100,95:100):100,((92:100,93:100):100,(89:100,(90:100,91:100):99.629):100):99.499):100,((((60:100,61:100):100,(62:100,63:100):100):100,(64:100,(70:100,(65:100,66:100,((80:100,(79:100,(74:100,76:100,77:100,(75:100,82:100,83:100,84:100,85:100):99.891):93.348):76.844):75.552,((69:100,(86:100,87:100,88:100):99.959):60.606,((68:100,(71:100,81:100):78.812):67.587,(78:100,(67:100,72:100,73:100):20.633):26.465):71.914):55.658):100):100):100):100):100,((54:100,55:100):100,(((59:100,(56:100,57:100,58:100,(52:100,53:100):100):99.874):100,((49:100,(50:100,51:100):100):100,(41:100,((38:100,39:100,40:100,(47:100,48:100):100):5.496,(42:100,(45:100,(46:100,(43:100,44:100):99.197):97.455):100):22.983):7.835):100):100):100,(22:100,((5:100,(4:100,(2:100,3:100):98.868):98.866):100,(23:100,(35:100,(6:100,(((33:100,(24:100,26:100):99.751):99.251,(34:100,(31:100,(32:100,(28:100,(27:100,(29:100,((25:100,30:100):92.102,(36:100,37:100):99.999):79.891):72.455):68.203):68.551):70.987):38.062):87.41):98.239,((9:100,(7:100,8:100):99.371):99.243,((18:100,19:100):100,((20:100,21:100):100,(15:100,((12:100,13:100):98.762,((10:100,11:100):96.996,(14:100,16:100,17:100):100):96.619):97.105):100):100):100):100):96.243):98.113):98.113):100):100):100):100):100):100):100):98.662):100):50); TREE Adams = (1,(122,(((111,112),(123,124,125,126,127),((106,107),(110,113,(108,109))),(114,115,116,117,118,119,120,121)),(((102,104,(101,103)),(105,(96,97),(98,99,100))),(146,147,(128,129,130),(134,135,136,137,(138,139,140,141),(131,142,143,(132,133),(144,145))))),(((92,93),(94,95),(89,90,91)),((((60,61),(62,63)),(64,(70,(65,66,(69,71,79,80,(86,87,88),(67,68,72,73,78,81),(74,76,77,(75,82,83,84,85))))))),((54,55),(((56,57,58,59,(52,53)),((49,(50,51)),(38,39,40,41,42,(47,48),(43,44,45,46)))),(22,((2,3,4,5),(23,35,(6,(27,28,29,31,32,33,34,(24,26),(25,30),(36,37)),(7,8,9,((18,19),((20,21),(10,11,12,13,15,(14,16,17)))))))))))))))); END; BEGIN NOTES; TEXT TAXON = 22 TEXT = Dolphin; TEXT TAXON = 23 TEXT = 'phoke; seal'; TEXT TAXON = 36 TEXT = 'Hedgehog (Ericaneus europaeus).'; SUT TAXON = 36 NAME = color INTEGER = 5; TEXT TAXON = 55 TEXT = 'viper, not the monotreme mammal.'; TEXT TAXON = 68 TEXT = 'Lophius, Lophiiformes, Teleostei'; TEXT TAXON = 111 TEXT = Monothyra_1; TEXT TAXON = 112 TEXT = 'Monothyra 2^n'; TEXT TAXON = 144 TEXT = Tettix_1; TEXT TAXON = 145 TEXT = Tettix_2; SU T = 112 C = 1 N = color I = 7; SU T = 113 C = 1 N = color I = 7; SU T = 112 C = 2 N = color I = 7; SU T = 113 C = 2 N = color I = 7; SU T = 112 C = 3 N = color I = 7; SU T = 113 C = 3 N = color I = 7; TEXT TAXON = 6 CHARACTER = 17 TEXT = 'Strange but correct. Marcel Checked: HA II, chapter 1: Moreover, also, animals have the flexions of their fore and hind limbs in directions opposite to one another, and in directions the reverse of those observed in the arms and legs of man; with the exception of the elephant. In other words, with the viviparous quadrupeds the front legs bend forwards and the hind ones backwards, and the concavities of the two pairs of limbs thus face one another. ^nThat means the elephant bends its legs like men do [according to Aristotle''s HA II ch. 1].^n'; SU T = 6 C = 17 N = color I = 11; TEXT TAXON = 112 CHARACTER = 27 TEXT = 'Initially scored as 5; is in fact 0.'; SU T = 112 C = 27 N = color I = 7; TEXT TAXON = 113 CHARACTER = 27 TEXT = 'Initially scored as 5; is in fact 0.'; SU T = 113 C = 27 N = color I = 7; SU T = 7 C = 28 N = color I = 7; SU T = 8 C = 28 N = color I = 7; SU T = 9 C = 28 N = color I = 7; SU T = 10 C = 28 N = color I = 7; SU T = 14 C = 28 N = color I = 7; SU T = 24 C = 28 N = color I = 7; TEXT TAXON = 58 CHARACTER = 33 TEXT = Initially_scored_edentulous._Aristotle_does_not_appear_to_comment_on_their_dentition.; SU T = 58 C = 33 N = color I = 7; TEXT TAXON = 60 CHARACTER = 33 TEXT = 'Problem here; edentulous shark? Is this really in Aristotle?'; SU T = 60 C = 33 N = color I = 7; SU T = 61 C = 33 N = color I = 7; SU T = 62 C = 33 N = color I = 7; SU T = 63 C = 33 N = color I = 7; SU T = 64 C = 33 N = color I = 7; SU T = 65 C = 33 N = color I = 7; SU T = 66 C = 33 N = color I = 7; SU T = 67 C = 33 N = color I = 7; SU T = 68 C = 33 N = color I = 7; SU T = 69 C = 33 N = color I = 7; SU T = 70 C = 33 N = color I = 7; SU T = 71 C = 33 N = color I = 7; SU T = 72 C = 33 N = color I = 7; SU T = 73 C = 33 N = color I = 7; SU T = 74 C = 33 N = color I = 7; SU T = 75 C = 33 N = color I = 7; SU T = 76 C = 33 N = color I = 7; SU T = 77 C = 33 N = color I = 7; SU T = 78 C = 33 N = color I = 7; SU T = 79 C = 33 N = color I = 7; SU T = 80 C = 33 N = color I = 7; SU T = 81 C = 33 N = color I = 7; SU T = 82 C = 33 N = color I = 7; SU T = 83 C = 33 N = color I = 7; SU T = 84 C = 33 N = color I = 7; SU T = 85 C = 33 N = color I = 7; SU T = 86 C = 33 N = color I = 7; SU T = 87 C = 33 N = color I = 7; SU T = 88 C = 33 N = color I = 7; SU T = 6 C = 34 N = color I = 7; SU T = 2 C = 36 N = color I = 7; SU T = 3 C = 36 N = color I = 7; SU T = 4 C = 36 N = color I = 7; SU T = 5 C = 36 N = color I = 7; SU T = 6 C = 36 N = color I = 7; SU T = 7 C = 36 N = color I = 7; SU T = 8 C = 36 N = color I = 7; SU T = 9 C = 36 N = color I = 7; SU T = 10 C = 36 N = color I = 7; SU T = 11 C = 36 N = color I = 7; SU T = 12 C = 36 N = color I = 7; SU T = 13 C = 36 N = color I = 7; SU T = 14 C = 36 N = color I = 7; SU T = 15 C = 36 N = color I = 7; SU T = 16 C = 36 N = color I = 7; SU T = 17 C = 36 N = color I = 7; SU T = 18 C = 36 N = color I = 7; SU T = 19 C = 36 N = color I = 7; SU T = 20 C = 36 N = color I = 7; SU T = 21 C = 36 N = color I = 7; SU T = 22 C = 36 N = color I = 7; SU T = 23 C = 36 N = color I = 7; SU T = 24 C = 36 N = color I = 7; SU T = 25 C = 36 N = color I = 7; SU T = 26 C = 36 N = color I = 7; SU T = 27 C = 36 N = color I = 7; SU T = 28 C = 36 N = color I = 7; SU T = 29 C = 36 N = color I = 7; SU T = 30 C = 36 N = color I = 7; SU T = 31 C = 36 N = color I = 7; SU T = 32 C = 36 N = color I = 7; SU T = 33 C = 36 N = color I = 7; SU T = 34 C = 36 N = color I = 7; SU T = 35 C = 36 N = color I = 7; SU T = 36 C = 36 N = color I = 7; SU T = 37 C = 36 N = color I = 7; SU T = 38 C = 36 N = color I = 7; SU T = 39 C = 36 N = color I = 7; SU T = 40 C = 36 N = color I = 7; SU T = 41 C = 36 N = color I = 7; SU T = 42 C = 36 N = color I = 7; SU T = 43 C = 36 N = color I = 7; SU T = 44 C = 36 N = color I = 7; SU T = 45 C = 36 N = color I = 7; SU T = 46 C = 36 N = color I = 7; SU T = 47 C = 36 N = color I = 7; SU T = 48 C = 36 N = color I = 7; SU T = 49 C = 36 N = color I = 7; SU T = 50 C = 36 N = color I = 7; SU T = 51 C = 36 N = color I = 7; SU T = 52 C = 36 N = color I = 7; SU T = 53 C = 36 N = color I = 7; SU T = 56 C = 36 N = color I = 7; SU T = 57 C = 36 N = color I = 7; SU T = 58 C = 36 N = color I = 7; SU T = 59 C = 36 N = color I = 7; TEXT CHARACTER = 37 TEXT = 'Or "uncloven foot''?'; SU T = 1 C = 37 N = color I = 7; SU T = 2 C = 37 N = color I = 7; SU T = 3 C = 37 N = color I = 7; SU T = 4 C = 37 N = color I = 7; SU T = 5 C = 37 N = color I = 7; SU T = 6 C = 37 N = color I = 7; SU T = 20 C = 37 N = color I = 7; SU T = 21 C = 37 N = color I = 7; SU T = 22 C = 37 N = color I = 7; SU T = 23 C = 37 N = color I = 7; SU T = 24 C = 37 N = color I = 7; SU T = 25 C = 37 N = color I = 7; SU T = 26 C = 37 N = color I = 7; SU T = 27 C = 37 N = color I = 7; SU T = 28 C = 37 N = color I = 7; SU T = 29 C = 37 N = color I = 7; SU T = 30 C = 37 N = color I = 7; SU T = 31 C = 37 N = color I = 7; SU T = 32 C = 37 N = color I = 7; SU T = 33 C = 37 N = color I = 7; SU T = 34 C = 37 N = color I = 7; SU T = 35 C = 37 N = color I = 7; SU T = 36 C = 37 N = color I = 7; SU T = 37 C = 37 N = color I = 7; SU T = 38 C = 37 N = color I = 7; SU T = 39 C = 37 N = color I = 7; SU T = 40 C = 37 N = color I = 7; SU T = 41 C = 37 N = color I = 7; SU T = 42 C = 37 N = color I = 7; SU T = 43 C = 37 N = color I = 7; SU T = 44 C = 37 N = color I = 7; SU T = 45 C = 37 N = color I = 7; SU T = 46 C = 37 N = color I = 7; SU T = 47 C = 37 N = color I = 7; SU T = 48 C = 37 N = color I = 7; SU T = 49 C = 37 N = color I = 7; SU T = 50 C = 37 N = color I = 7; SU T = 51 C = 37 N = color I = 7; SU T = 52 C = 37 N = color I = 7; SU T = 53 C = 37 N = color I = 7; SU T = 54 C = 37 N = color I = 7; SU T = 55 C = 37 N = color I = 7; SU T = 56 C = 37 N = color I = 7; SU T = 57 C = 37 N = color I = 7; SU T = 58 C = 37 N = color I = 7; SU T = 59 C = 37 N = color I = 7; SU T = 60 C = 37 N = color I = 7; SU T = 61 C = 37 N = color I = 7; SU T = 62 C = 37 N = color I = 7; SU T = 63 C = 37 N = color I = 7; SU T = 64 C = 37 N = color I = 7; SU T = 65 C = 37 N = color I = 7; SU T = 66 C = 37 N = color I = 7; SU T = 67 C = 37 N = color I = 7; SU T = 68 C = 37 N = color I = 7; SU T = 69 C = 37 N = color I = 7; SU T = 70 C = 37 N = color I = 7; SU T = 71 C = 37 N = color I = 7; SU T = 72 C = 37 N = color I = 7; SU T = 73 C = 37 N = color I = 7; SU T = 74 C = 37 N = color I = 7; SU T = 75 C = 37 N = color I = 7; SU T = 76 C = 37 N = color I = 7; SU T = 77 C = 37 N = color I = 7; SU T = 78 C = 37 N = color I = 7; SU T = 79 C = 37 N = color I = 7; SU T = 80 C = 37 N = color I = 7; SU T = 81 C = 37 N = color I = 7; SU T = 82 C = 37 N = color I = 7; SU T = 83 C = 37 N = color I = 7; SU T = 84 C = 37 N = color I = 7; SU T = 85 C = 37 N = color I = 7; SU T = 86 C = 37 N = color I = 7; SU T = 87 C = 37 N = color I = 7; SU T = 88 C = 37 N = color I = 7; SU T = 89 C = 37 N = color I = 7; SU T = 90 C = 37 N = color I = 7; SU T = 91 C = 37 N = color I = 7; SU T = 92 C = 37 N = color I = 7; SU T = 93 C = 37 N = color I = 7; SU T = 94 C = 37 N = color I = 7; SU T = 95 C = 37 N = color I = 7; SU T = 96 C = 37 N = color I = 7; SU T = 97 C = 37 N = color I = 7; SU T = 98 C = 37 N = color I = 7; SU T = 99 C = 37 N = color I = 7; SU T = 100 C = 37 N = color I = 7; SU T = 101 C = 37 N = color I = 7; SU T = 102 C = 37 N = color I = 7; SU T = 103 C = 37 N = color I = 7; SU T = 104 C = 37 N = color I = 7; SU T = 105 C = 37 N = color I = 7; SU T = 106 C = 37 N = color I = 7; SU T = 107 C = 37 N = color I = 7; SU T = 108 C = 37 N = color I = 7; SU T = 109 C = 37 N = color I = 7; SU T = 110 C = 37 N = color I = 7; SU T = 111 C = 37 N = color I = 7; SU T = 112 C = 37 N = color I = 7; SU T = 113 C = 37 N = color I = 7; SU T = 114 C = 37 N = color I = 7; SU T = 115 C = 37 N = color I = 7; SU T = 116 C = 37 N = color I = 7; SU T = 117 C = 37 N = color I = 7; SU T = 118 C = 37 N = color I = 7; SU T = 119 C = 37 N = color I = 7; SU T = 120 C = 37 N = color I = 7; SU T = 121 C = 37 N = color I = 7; SU T = 122 C = 37 N = color I = 7; SU T = 123 C = 37 N = color I = 7; SU T = 124 C = 37 N = color I = 7; SU T = 125 C = 37 N = color I = 7; SU T = 126 C = 37 N = color I = 7; SU T = 127 C = 37 N = color I = 7; SU T = 128 C = 37 N = color I = 7; SU T = 129 C = 37 N = color I = 7; SU T = 130 C = 37 N = color I = 7; SU T = 131 C = 37 N = color I = 7; SU T = 132 C = 37 N = color I = 7; SU T = 133 C = 37 N = color I = 7; SU T = 134 C = 37 N = color I = 7; SU T = 135 C = 37 N = color I = 7; SU T = 136 C = 37 N = color I = 7; SU T = 137 C = 37 N = color I = 7; SU T = 138 C = 37 N = color I = 7; SU T = 139 C = 37 N = color I = 7; SU T = 140 C = 37 N = color I = 7; SU T = 141 C = 37 N = color I = 7; SU T = 142 C = 37 N = color I = 7; SU T = 143 C = 37 N = color I = 7; SU T = 144 C = 37 N = color I = 7; SU T = 145 C = 37 N = color I = 7; SU T = 146 C = 37 N = color I = 7; SU T = 147 C = 37 N = color I = 7; SU C = 38 N = color I = 7; TEXT TAXON = 15 CHARACTER = 38 TEXT = 'Strange, but double-checked in Aristotle. It is said that the oryx has cloven hooves on their feet and one horn. Aristotle may never have seen the oryx.'; SU T = 15 C = 38 N = color I = 11; TEXT TAXON = 16 CHARACTER = 38 TEXT = 'Aristotle says that no animal has horns hard and solid throughout except the elaphos. So, we changed the state for prox.'; SU T = 16 C = 38 N = color I = 7; SU T = 1 C = 39 N = color I = 7; SU T = 11 C = 39 N = color I = 7; SU T = 17 C = 39 N = color I = 7; SU T = 20 C = 39 N = color I = 7; SU T = 21 C = 39 N = color I = 7; SU T = 89 C = 39 N = color I = 7; SU T = 90 C = 39 N = color I = 7; SU T = 91 C = 39 N = color I = 7; SU T = 92 C = 39 N = color I = 7; SU T = 93 C = 39 N = color I = 7; SU T = 94 C = 39 N = color I = 7; SU T = 95 C = 39 N = color I = 7; SU T = 96 C = 39 N = color I = 7; SU T = 97 C = 39 N = color I = 7; SU T = 98 C = 39 N = color I = 7; SU T = 99 C = 39 N = color I = 7; SU T = 100 C = 39 N = color I = 7; SU T = 101 C = 39 N = color I = 7; SU T = 102 C = 39 N = color I = 7; SU T = 103 C = 39 N = color I = 7; SU T = 104 C = 39 N = color I = 7; SU T = 105 C = 39 N = color I = 7; SU T = 106 C = 39 N = color I = 7; SU T = 107 C = 39 N = color I = 7; SU T = 108 C = 39 N = color I = 7; SU T = 109 C = 39 N = color I = 7; SU T = 110 C = 39 N = color I = 7; SU T = 111 C = 39 N = color I = 7; SU T = 112 C = 39 N = color I = 7; SU T = 113 C = 39 N = color I = 7; SU T = 114 C = 39 N = color I = 7; SU T = 115 C = 39 N = color I = 7; SU T = 116 C = 39 N = color I = 7; SU T = 117 C = 39 N = color I = 7; SU T = 118 C = 39 N = color I = 7; SU T = 119 C = 39 N = color I = 7; SU T = 120 C = 39 N = color I = 7; SU T = 121 C = 39 N = color I = 7; SU T = 122 C = 39 N = color I = 7; SU T = 123 C = 39 N = color I = 7; SU T = 124 C = 39 N = color I = 7; SU T = 125 C = 39 N = color I = 7; SU T = 126 C = 39 N = color I = 7; SU T = 127 C = 39 N = color I = 7; SU T = 128 C = 39 N = color I = 7; SU T = 129 C = 39 N = color I = 7; SU T = 130 C = 39 N = color I = 7; SU T = 131 C = 39 N = color I = 7; SU T = 132 C = 39 N = color I = 7; SU T = 133 C = 39 N = color I = 7; SU T = 134 C = 39 N = color I = 7; SU T = 135 C = 39 N = color I = 7; SU T = 136 C = 39 N = color I = 7; SU T = 137 C = 39 N = color I = 7; SU T = 138 C = 39 N = color I = 7; SU T = 139 C = 39 N = color I = 7; SU T = 140 C = 39 N = color I = 7; SU T = 141 C = 39 N = color I = 7; SU T = 142 C = 39 N = color I = 7; SU T = 143 C = 39 N = color I = 7; SU T = 144 C = 39 N = color I = 7; SU T = 145 C = 39 N = color I = 7; SU T = 146 C = 39 N = color I = 7; SU T = 147 C = 39 N = color I = 7; TEXT CHARACTER = 40 TEXT = 'Presumably redundant with number of breasts because one teat per brest normally, but leave as is, except for reordering.'; SU T = 89 C = 40 N = color I = 7; SU T = 90 C = 40 N = color I = 7; SU T = 91 C = 40 N = color I = 7; SU T = 92 C = 40 N = color I = 7; SU T = 93 C = 40 N = color I = 7; SU T = 94 C = 40 N = color I = 7; SU T = 95 C = 40 N = color I = 7; SU T = 96 C = 40 N = color I = 7; SU T = 97 C = 40 N = color I = 7; SU T = 98 C = 40 N = color I = 7; SU T = 99 C = 40 N = color I = 7; SU T = 100 C = 40 N = color I = 7; SU T = 101 C = 40 N = color I = 7; SU T = 102 C = 40 N = color I = 7; SU T = 103 C = 40 N = color I = 7; SU T = 104 C = 40 N = color I = 7; SU T = 105 C = 40 N = color I = 7; SU T = 106 C = 40 N = color I = 7; SU T = 107 C = 40 N = color I = 7; SU T = 108 C = 40 N = color I = 7; SU T = 109 C = 40 N = color I = 7; SU T = 110 C = 40 N = color I = 7; SU T = 111 C = 40 N = color I = 7; SU T = 112 C = 40 N = color I = 7; SU T = 113 C = 40 N = color I = 7; SU T = 114 C = 40 N = color I = 7; SU T = 115 C = 40 N = color I = 7; SU T = 116 C = 40 N = color I = 7; SU T = 117 C = 40 N = color I = 7; SU T = 118 C = 40 N = color I = 7; SU T = 119 C = 40 N = color I = 7; SU T = 120 C = 40 N = color I = 7; SU T = 121 C = 40 N = color I = 7; SU T = 122 C = 40 N = color I = 7; SU T = 123 C = 40 N = color I = 7; SU T = 124 C = 40 N = color I = 7; SU T = 125 C = 40 N = color I = 7; SU T = 126 C = 40 N = color I = 7; SU T = 127 C = 40 N = color I = 7; SU T = 128 C = 40 N = color I = 7; SU T = 129 C = 40 N = color I = 7; SU T = 130 C = 40 N = color I = 7; SU T = 131 C = 40 N = color I = 7; SU T = 132 C = 40 N = color I = 7; SU T = 133 C = 40 N = color I = 7; SU T = 134 C = 40 N = color I = 7; SU T = 135 C = 40 N = color I = 7; SU T = 136 C = 40 N = color I = 7; SU T = 137 C = 40 N = color I = 7; SU T = 138 C = 40 N = color I = 7; SU T = 139 C = 40 N = color I = 7; SU T = 140 C = 40 N = color I = 7; SU T = 141 C = 40 N = color I = 7; SU T = 142 C = 40 N = color I = 7; SU T = 143 C = 40 N = color I = 7; SU T = 144 C = 40 N = color I = 7; SU T = 145 C = 40 N = color I = 7; SU T = 146 C = 40 N = color I = 7; SU T = 147 C = 40 N = color I = 7; SU T = 6 C = 42 N = color I = 7; TEXT CHARACTER = 44 TEXT = States_reordered_to_have_0_primitive; TEXT CHARACTER = 48 TEXT = 'External ear, obviously'; TEXT CHARACTER = 49 TEXT = 'States reordered to have 0 primitive; further reordered for the most primitive type of tongue (hard and spiny, firmly attached) to have state 1 (state 0 being the absence of tongue).'; TEXT CHARACTER = 50 TEXT = 'Something is very wrong here; correct. From Marcel: "In HA II, 11, Aristotle says that the "chameleon resembles the lizard in the general configuration of its body, but the ribs stretch downwards and meet together under the belly as is the case with fishes, and the spine sticks up as with the fish."^n^n^nThe "but" in line 2 can also be read as "and". So, it is up to us to give to the sauron (lizard) state 0 or 1.^n'; SU T = 52 C = 50 N = color I = 7; SU T = 3 C = 54 N = color I = 7; SU T = 4 C = 54 N = color I = 7; SU T = 5 C = 54 N = color I = 7; SU T = 6 C = 54 N = color I = 7; SU T = 7 C = 54 N = color I = 7; SU T = 8 C = 54 N = color I = 7; SU T = 9 C = 54 N = color I = 7; SU T = 10 C = 54 N = color I = 7; SU T = 11 C = 54 N = color I = 7; SU T = 12 C = 54 N = color I = 7; SU T = 13 C = 54 N = color I = 7; SU T = 14 C = 54 N = color I = 7; SU T = 15 C = 54 N = color I = 7; SU T = 16 C = 54 N = color I = 7; SU T = 17 C = 54 N = color I = 7; SU T = 18 C = 54 N = color I = 7; SU T = 19 C = 54 N = color I = 7; SU T = 20 C = 54 N = color I = 7; SU T = 21 C = 54 N = color I = 7; SU T = 23 C = 54 N = color I = 7; SU T = 24 C = 54 N = color I = 7; SU T = 25 C = 54 N = color I = 7; SU T = 26 C = 54 N = color I = 7; SU T = 27 C = 54 N = color I = 7; SU T = 28 C = 54 N = color I = 7; SU T = 29 C = 54 N = color I = 7; SU T = 30 C = 54 N = color I = 7; SU T = 31 C = 54 N = color I = 7; SU T = 32 C = 54 N = color I = 7; SU T = 33 C = 54 N = color I = 7; SU T = 34 C = 54 N = color I = 7; SU T = 35 C = 54 N = color I = 7; SU T = 36 C = 54 N = color I = 7; SU T = 37 C = 54 N = color I = 7; TEXT TAXON = 53 CHARACTER = 54 TEXT = 'Check; might be wrong.'; SU T = 53 C = 54 N = color I = 5; TEXT CHARACTER = 58 TEXT = 'Reformulated. Was initially "No epiglottis": 0, no; 1, yes.'; TEXT CHARACTER = 59 TEXT = 'I changed the formulation, which was initially "no passage for the genitals visible externally".'; SU T = 62 C = 60 N = color I = 7; SU T = 63 C = 60 N = color I = 7; SU T = 67 C = 60 N = color I = 7; SU T = 70 C = 60 N = color I = 7; TEXT CHARACTER = 64 TEXT = 'Modified (ML 2020-9-4) by removing former state 0 (absence), moved to character 158 (presence/absence of gills).'; TEXT CHARACTER = 65 TEXT = Presumably_large_bony_scale_in_scale_pockets.; SU T = 54 C = 73 N = color I = 7; SU T = 55 C = 73 N = color I = 7; SU T = 50 C = 86 N = color I = 7; SU T = 51 C = 86 N = color I = 7; TEXT CHARACTER = 104 TEXT = 'I leave unordered because one row is primitve compared to 2, but not in this context; complicated.'; SU T = 89 C = 107 N = color I = 7; SU T = 90 C = 107 N = color I = 7; SU T = 91 C = 107 N = color I = 7; SU T = 92 C = 107 N = color I = 7; SU T = 93 C = 107 N = color I = 7; SU T = 94 C = 107 N = color I = 7; TEXT CHARACTER = 111 TEXT = See_character_124; SU T = 105 C = 121 N = color I = 7; TEXT CHARACTER = 138 TEXT = 'Applies at the level of mollusks; leave unordered.'; SU T = 112 C = 138 N = color I = 7; TEXT CHARACTER = 152 TEXT = Leave_unordered; TEXT CHARACTER = 154 TEXT = 'Probably not all homologous; leave unordered.'; SU T = 62 C = 158 N = color I = 7; SU T = 63 C = 158 N = color I = 7; SU T = 68 C = 158 N = color I = 7; TEXT TAXON = 46 CHARACTER = 160 TEXT = 'Rescored; was initially "upper eyelid".'; SU T = 46 C = 160 N = color I = 7; TEXT TAXON = 2 CHARACTER = 161 TEXT = Updated.; SU T = 2 C = 161 N = color I = 7; SU T = 3 C = 161 N = color I = 7; SU T = 4 C = 161 N = color I = 7; SU T = 5 C = 161 N = color I = 7; SU T = 6 C = 161 N = color I = 7; SU T = 7 C = 161 N = color I = 7; SU T = 8 C = 161 N = color I = 7; SU T = 9 C = 161 N = color I = 7; SU T = 10 C = 161 N = color I = 7; SU T = 11 C = 161 N = color I = 7; SU T = 12 C = 161 N = color I = 7; SU T = 13 C = 161 N = color I = 7; SU T = 14 C = 161 N = color I = 7; SU T = 15 C = 161 N = color I = 7; SU T = 16 C = 161 N = color I = 7; SU T = 17 C = 161 N = color I = 7; SU T = 18 C = 161 N = color I = 7; SU T = 19 C = 161 N = color I = 7; SU T = 20 C = 161 N = color I = 7; SU T = 21 C = 161 N = color I = 7; SU T = 22 C = 161 N = color I = 7; SU T = 23 C = 161 N = color I = 7; SU T = 24 C = 161 N = color I = 7; SU T = 25 C = 161 N = color I = 7; SU T = 26 C = 161 N = color I = 7; SU T = 27 C = 161 N = color I = 7; SU T = 28 C = 161 N = color I = 7; SU T = 29 C = 161 N = color I = 7; SU T = 30 C = 161 N = color I = 7; SU T = 31 C = 161 N = color I = 7; SU T = 32 C = 161 N = color I = 7; SU T = 33 C = 161 N = color I = 7; SU T = 34 C = 161 N = color I = 7; SU T = 35 C = 161 N = color I = 7; SU T = 36 C = 161 N = color I = 7; SU T = 37 C = 161 N = color I = 7; SU T = 53 C = 161 N = color I = 7; TEXT CHARACTER = 3 STATE = 0 TEXT = States_added.; TEXT CHARACTER = 32 STATE = 3 TEXT = 'There was no label for state 3 (ML 2020-9-3). On 2020-10-15, Marcel indicated that this is "two teeth" (for Aristotle).'; TEXT CHARACTER = 51 STATE = 0 TEXT = jno; TEXT CHARACTER = 73 STATE = 2 TEXT = 'Provisional; was not listed (ML 2020-9-3).'; END; Begin MESQUITE; MESQUITESCRIPTVERSION 2; TITLE AUTO; tell ProjectCoordinator; timeSaved 1610369996877; getEmployee #mesquite.minimal.ManageTaxa.ManageTaxa; tell It; setID 0 4327107532415582202; endTell; getEmployee #mesquite.charMatrices.ManageCharacters.ManageCharacters; tell It; setID 0 910282458174410939; tell It; setDefaultOrder 0 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 54 57 58 59 60 61 62 63 64 65 66 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89 90 91 92 93 94 95 96 97 98 99 100 101 102 103 104 105 106 107 108 109 110 111 112 113 114 115 116 117 118 119 120 121 122 123 124 125 126 127 128 129 130 131 132 133 134 135 136 137 138 139 140 141 142 143 144 145 146 147 148 149 150 151 152 153 154 155 156 157 158 159 160 67 161 55 56; attachments ; endTell; mqVersion 361; checksumv 0 3 499110046 null getNumChars 161 numChars 161 getNumTaxa 147 numTaxa 147 short true bits 63 states 63 sumSquaresStatesOnly 202271.0 sumSquares 202271.0 longCompressibleToShort false usingShortMatrix true NumFiles 1 NumMatrices 1; mqVersion; endTell; getWindow; tell It; suppress; setResourcesState false false 3; setPopoutState 300; setExplanationSize 0; setAnnotationSize 0; setFontIncAnnot 0; setFontIncExp 0; setSize 1363 680; setLocation 0 23; setFont SanSerif; setFontSize 10; getToolPalette; tell It; endTell; desuppress; endTell; getEmployee #mesquite.trees.ManageTrees.ManageTrees; tell It; showTrees 0 #mesquite.lists.TreesList.TreesList; tell It; setTreeBlock 1; getWindow; tell It; useTargetValue off; setTargetValue ; newAssistant #mesquite.lists.NumForTreeList.NumForTreeList; tell It; suppress; setValueTask #mesquite.trees.NumberOfTaxa.NumberOfTaxa; desuppress; endTell; newAssistant #mesquite.lists.TreeListRooted.TreeListRooted; newAssistant #mesquite.lists.TreeListPolys.TreeListPolys; newAssistant #mesquite.lists.TreeListPolyAssumption.TreeListPolyAssumption; getTable; tell It; rowNamesWidth 269; endTell; setExplanationSize 30; setAnnotationSize 20; setFontIncAnnot 0; setFontIncExp 0; setSize 1360 608; setLocation 0 23; setFont SanSerif; setFontSize 10; getToolPalette; tell It; setTool mesquite.lists.TreesList.TreesListWindow.ibeam; endTell; endTell; showWindow; endTell; showTreeBlocks #mesquite.lists.TreeblockList.TreeblockList; tell It; getWindow; tell It; useTargetValue off; setTargetValue ; newAssistant #mesquite.lists.TreeblocksListNumber.TreeblocksListNumber; newAssistant #mesquite.lists.TreeblocksListTaxa.TreeblocksListTaxa; getTable; tell It; rowNamesWidth 304; endTell; setExplanationSize 30; setAnnotationSize 20; setFontIncAnnot 0; setFontIncExp 0; setSize 1360 608; setLocation 0 23; setFont SanSerif; setFontSize 10; getToolPalette; tell It; setTool mesquite.lists.lib.ListableVectorWindow.arrow; endTell; endTell; showWindow; endTell; endTell; getEmployee #mesquite.trees.BasicTreeWindowCoord.BasicTreeWindowCoord; tell It; makeTreeWindow #4327107532415582202 #mesquite.trees.BasicTreeWindowMaker.BasicTreeWindowMaker; tell It; suppressEPCResponse; setTreeSource #mesquite.trees.StoredTrees.StoredTrees; tell It; setTreeBlock 1; setTreeBlockID CR2P1769b27cf8f8; toggleUseWeights off; endTell; setAssignedID 1460.1608920853370.3207013062299540010; getTreeWindow; tell It; setExplanationSize 30; setAnnotationSize 20; setFontIncAnnot 0; setFontIncExp 0; setSize 1360 608; setLocation 0 23; setFont SanSerif; setFontSize 10; getToolPalette; tell It; setTool mesquite.trees.NodeNamer.NodeNamerExtra.nodeNamer; endTell; getTreeDrawCoordinator #mesquite.trees.BasicTreeDrawCoordinator.BasicTreeDrawCoordinator; tell It; suppress; setTreeDrawer #mesquite.trees.SquareLineTree.SquareLineTree; tell It; setNodeLocs #mesquite.trees.NodeLocsStandard.NodeLocsStandard; tell It; branchLengthsToggle off; toggleScale on; toggleBroadScale off; toggleCenter on; toggleEven on; setFixedTaxonDistance 0; endTell; setEdgeWidth 6; showEdgeLines on; orientUp; endTell; setBackground White; setBranchColor Black; showNodeNumbers off; showBranchColors on; labelBranchLengths on; centerBrLenLabels on; showBrLensUnspecified on; showBrLenLabelsOnTerminals off; setBrLenLabelColor 0 0 255; setNumBrLenDecimals 6; setSelectedTaxonHighlightMode 1; desuppress; getEmployee #mesquite.trees.BasicDrawTaxonNames.BasicDrawTaxonNames; tell It; setFontSize 18; setColor Black; setTaxonNameStyler #mesquite.trees.NoColorForTaxon.NoColorForTaxon; toggleShadePartition off; toggleShowFootnotes on; toggleNodeLabels on; toggleCenterNodeNames off; toggleShowNames on; namesAngle ?; endTell; endTell; setTreeNumber 2; setDrawingSizeMode 2 3000 668 587 0; toggleLegendFloat on; toggleTextOnTree off; togglePrintName off; showWindow; endTell; desuppressEPCResponse; getEmployee #mesquite.trees.ColorBranches.ColorBranches; tell It; setColor Red; removeColor off; endTell; getEmployee #mesquite.ornamental.BranchNotes.BranchNotes; tell It; setAlwaysOn off; endTell; getEmployee #mesquite.ornamental.ColorTreeByPartition.ColorTreeByPartition; tell It; colorByPartition off; endTell; getEmployee #mesquite.ornamental.DrawTreeAssocDoubles.DrawTreeAssocDoubles; tell It; setOn on; toggleShow consensusFrequency; toggleShow posteriorProbability; toggleShow bootstrapFrequency; toggleShow consensusFrequency; toggleShow posteriorProbability; toggleShow bootstrapFrequency; setDigits 4; setThreshold ?; writeAsPercentage off; toggleCentred off; toggleHorizontal on; toggleWhiteEdges on; toggleShowOnTerminals on; setFontSize 10; setOffset 0 0; endTell; getEmployee #mesquite.ornamental.DrawTreeAssocStrings.DrawTreeAssocStrings; tell It; setOn on; toggleCentred on; toggleHorizontal on; setFontSize 10; setOffset 0 0; toggleShowOnTerminals on; endTell; getEmployee #mesquite.trees.TreeInfoValues.TreeInfoValues; tell It; panelOpen false; endTell; endTell; makeTreeWindow #4327107532415582202 #mesquite.trees.BasicTreeWindowMaker.BasicTreeWindowMaker; tell It; suppressEPCResponse; setTreeSource #mesquite.trees.StoredTrees.StoredTrees; tell It; setTreeBlock 2; setTreeBlockID CR2P176a44fbead11; toggleUseWeights off; endTell; setAssignedID 1520.1609074464785.2656063080113611679; getTreeWindow; tell It; setExplanationSize 30; setAnnotationSize 20; setFontIncAnnot 0; setFontIncExp 0; setSize 1360 608; setLocation 0 23; setFont SanSerif; setFontSize 10; getToolPalette; tell It; setTool mesquite.trees.BasicTreeWindowMaker.BasicTreeWindow.ladderize; endTell; getTreeDrawCoordinator #mesquite.trees.BasicTreeDrawCoordinator.BasicTreeDrawCoordinator; tell It; suppress; setTreeDrawer #mesquite.trees.SquareLineTree.SquareLineTree; tell It; setNodeLocs #mesquite.trees.NodeLocsStandard.NodeLocsStandard; tell It; branchLengthsToggle off; toggleScale on; toggleBroadScale off; toggleCenter on; toggleEven on; setFixedTaxonDistance 0; endTell; setEdgeWidth 4; showEdgeLines on; orientUp; endTell; setBackground White; setBranchColor Black; showNodeNumbers off; showBranchColors on; labelBranchLengths off; centerBrLenLabels on; showBrLensUnspecified on; showBrLenLabelsOnTerminals on; setBrLenLabelColor 0 0 255; setNumBrLenDecimals 6; setSelectedTaxonHighlightMode 1; desuppress; getEmployee #mesquite.trees.BasicDrawTaxonNames.BasicDrawTaxonNames; tell It; setColor Black; setTaxonNameStyler #mesquite.trees.NoColorForTaxon.NoColorForTaxon; toggleShadePartition off; toggleShowFootnotes on; toggleNodeLabels on; toggleCenterNodeNames off; toggleShowNames on; namesAngle ?; endTell; endTell; setTreeNumber 2; setDrawingSizeMode 1; toggleLegendFloat on; toggleTextOnTree off; togglePrintName off; showWindow; endTell; desuppressEPCResponse; getEmployee #mesquite.trees.ColorBranches.ColorBranches; tell It; setColor Red; removeColor off; endTell; getEmployee #mesquite.ornamental.BranchNotes.BranchNotes; tell It; setAlwaysOn off; endTell; getEmployee #mesquite.ornamental.ColorTreeByPartition.ColorTreeByPartition; tell It; colorByPartition off; endTell; getEmployee #mesquite.ornamental.DrawTreeAssocDoubles.DrawTreeAssocDoubles; tell It; setOn on; toggleShow consensusFrequency; toggleShow posteriorProbability; toggleShow bootstrapFrequency; toggleShow consensusFrequency; toggleShow posteriorProbability; toggleShow bootstrapFrequency; setDigits 4; setThreshold ?; writeAsPercentage off; toggleCentred off; toggleHorizontal on; toggleWhiteEdges on; toggleShowOnTerminals on; setFontSize 10; setOffset 0 0; endTell; getEmployee #mesquite.ornamental.DrawTreeAssocStrings.DrawTreeAssocStrings; tell It; setOn on; toggleCentred on; toggleHorizontal on; setFontSize 10; setOffset 0 0; toggleShowOnTerminals on; endTell; getEmployee #mesquite.trees.TreeInfoValues.TreeInfoValues; tell It; panelOpen false; endTell; endTell; endTell; getEmployee #mesquite.charMatrices.BasicDataWindowCoord.BasicDataWindowCoord; tell It; showDataWindow #910282458174410939 #mesquite.charMatrices.BasicDataWindowMaker.BasicDataWindowMaker; tell It; getWindow; tell It; getTable; tell It; rowNamesWidth 110; endTell; setExplanationSize 30; setAnnotationSize 60; setFontIncAnnot 0; setFontIncExp 0; setSize 1360 568; setLocation 0 23; setFont SanSerif; setFontSize 10; getToolPalette; tell It; setTool mesquite.charMatrices.BasicDataWindowMaker.BasicDataWindow.arrow; endTell; setActive; setTool mesquite.charMatrices.BasicDataWindowMaker.BasicDataWindow.arrow; colorCells #mesquite.charMatrices.ColorCells.ColorCells; tell It; setColor Yellow; removeColor off; endTell; colorRowNames #mesquite.charMatrices.TaxonGroupColor.TaxonGroupColor; colorColumnNames #mesquite.charMatrices.CharGroupColor.CharGroupColor; colorText #mesquite.charMatrices.NoColor.NoColor; setBackground White; toggleShowNames off; toggleShowTaxonNames on; toggleTight off; toggleThinRows off; toggleShowChanges on; toggleSeparateLines off; toggleShowStates on; toggleReduceCellBorders off; toggleAutoWCharNames on; toggleAutoTaxonNames off; toggleShowDefaultCharNames off; toggleConstrainCW on; toggleBirdsEye off; toggleShowPaleGrid off; toggleShowPaleCellColors off; toggleShowPaleExcluded off; togglePaleInapplicable on; togglePaleMissing off; toggleShowBoldCellText off; toggleAllowAutosize on; toggleColorsPanel off; toggleDiagonal on; setDiagonalHeight 135; toggleLinkedScrolling on; toggleScrollLinkedTables off; endTell; showWindow; getWindow; tell It; forceAutosize; endTell; getEmployee #mesquite.charMatrices.AlterData.AlterData; tell It; toggleBySubmenus off; endTell; getEmployee #mesquite.charMatrices.ColorByState.ColorByState; tell It; setStateLimit 9; toggleUniformMaximum on; endTell; getEmployee #mesquite.categ.StateNamesEditor.StateNamesEditor; tell It; makeWindow; tell It; getTable; tell It; rowNamesWidth 650; endTell; popAsTile false; popOut; setExplanationSize 30; setAnnotationSize 60; setFontIncAnnot 0; setFontIncExp 0; setSize 1355 851; setLocation 61 23; setFont SanSerif; setFontSize 10; getToolPalette; tell It; setTool mesquite.categ.StateNamesEditor.StateNamesWindow.ibeam; endTell; rowsAreCharacters on; toggleConstrainChar on; toggleConstrainCharNum 3; togglePanel off; toggleSummaryPanel off; endTell; showWindow; endTell; getEmployee #mesquite.categ.StateNamesStrip.StateNamesStrip; tell It; showStrip off; endTell; getEmployee #mesquite.charMatrices.AnnotPanel.AnnotPanel; tell It; togglePanel off; endTell; getEmployee #mesquite.charMatrices.CharReferenceStrip.CharReferenceStrip; tell It; showStrip off; endTell; getEmployee #mesquite.charMatrices.QuickKeySelector.QuickKeySelector; tell It; autotabOff; endTell; getEmployee #mesquite.charMatrices.SelSummaryStrip.SelSummaryStrip; tell It; showStrip off; endTell; getEmployee #mesquite.stratigraphictools.ColorScaleCells.ColorScaleCells; tell It; setColor Red; removeColor off; endTell; getEmployee #mesquite.categ.SmallStateNamesEditor.SmallStateNamesEditor; tell It; panelOpen true; endTell; endTell; endTell; getEmployee #mesquite.charMatrices.ManageCharacters.ManageCharacters; tell It; showCharacters #910282458174410939 #mesquite.lists.CharacterList.CharacterList; tell It; setData 0; getWindow; tell It; useTargetValue off; setTargetValue ; newAssistant #mesquite.lists.DefaultCharOrder.DefaultCharOrder; newAssistant #mesquite.lists.CharListInclusion.CharListInclusion; newAssistant #mesquite.lists.CharListPartition.CharListPartition; newAssistant #mesquite.parsimony.CharListParsModels.CharListParsModels; newAssistant #mesquite.lists.CharNumForList.CharNumForList; tell It; suppress; setValueTask #mesquite.categ.NumberOfStates.NumberOfStates; toggleShadeCells off; desuppress; endTell; getTable; tell It; rowNamesWidth 816; endTell; popAsTile false; popOut; setExplanationSize 30; setAnnotationSize 20; setFontIncAnnot 0; setFontIncExp 0; setSize 976 826; setLocation 334 23; setFont SanSerif; setFontSize 10; getToolPalette; tell It; setTool mesquite.lists.CharacterList.CharacterListWindow.arrow; endTell; endTell; showWindow; getEmployee #mesquite.lists.CharListAnnotPanel.CharListAnnotPanel; tell It; togglePanel off; endTell; endTell; endTell; getEmployee #mesquite.charMatrices.ManageCharModels.ManageCharModels; tell It; getEmployee #mesquite.parsimony.StepMatrixCurator.StepMatrixCurator; tell It; editModel Stepmatrix_breasts #mesquite.minimal.WindowBabysitter.WindowBabysitter; tell It; getWindow; tell It; setExplanationSize 30; setAnnotationSize 20; setFontIncAnnot 0; setFontIncExp 0; setSize 1360 608; setLocation 0 23; setFont SanSerif; setFontSize 10; getToolPalette; tell It; setTool mesquite.categ.lib.CategTModelEditWindow.ibeam; endTell; endTell; showWindow; endTell; endTell; endTell; newAssistant #mesquite.basic.TextWindowMaker.TextWindowMaker; tell It; setText 'Characters already labeled and checked in version 27: 27, 32-33, 39-43, 60, 62-64, 73, 86, 103-104, 107, 113, 119, 121, 131, 138, 152, 154, 158.'; setTitle Note_2; getWindow; tell It; setExplanationSize 0; setAnnotationSize 0; setFontIncAnnot 0; setFontIncExp 0; setSize 1360 658; setLocation 0 23; setFont SanSerif; setFontSize 10; getToolPalette; tell It; endTell; endTell; showWindow; endTell; endTell; end;